filesystem-context-mcp-server

Filesystem MCP Server

 

  

 

Secure filesystem MCP server for reading, writing, searching, diffing, and patching files.

Table of Contents

• Overview
• Key Features
• Quick Start — Docker · CLI Usage
• Client Configuration
• Use Cases
• Architecture
• MCP Surface — Tools · Resources · Prompts
• MCP Capabilities — Tool Annotations · Structured Output
• Configuration — HTTP & Auth · File Size Limits · Access Control · Output & Inline Limits · Tasks · Logging & Diagnostics · Performance
• HTTP Endpoints
• Security
• Development
• Troubleshooting
• Credits
• Contributing and License

Overview

A secure, production-ready Model Context Protocol server that gives AI assistants controlled access to the local filesystem. All operations are sandboxed to explicitly allowed directories with path traversal prevention, sensitive file blocking, and optional Bearer token authentication.

Supports stdio (default) and Node Streamable HTTP transport. HTTP sessions are implemented with isolated per-session server state. The HTTP transport is stateful by default and currently non-resumable; it does not persist an event store for Last-Event-ID replay.

Key Features

• 18 filesystem tools — read, write, search, diff, patch, hash, and bulk operations with structured output schemas
• Security-first — path validation, symlink escape prevention, sensitive file denylist, localhost-only CORS, Host header validation for loopback HTTP binds, optional API key auth
• Dual transport — stdio for local use, Node Streamable HTTP for networked/multi-session deployments
• Structured output — all tools return typed outputSchema / structuredContent for reliable LLM parsing
• Self-documenting — 6 built-in resources (internal://instructions, internal://tool-catalog, etc.) and 4 built-in prompts (get-help, compare-files, analyze-path, get-tool-help)

Requirements

• Node.js >= 24

Quick Start

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

Docker

docker run -i --rm -v /path/to/project:/workspace:ro ghcr.io/j0hanz/filesystem-mcp /workspace

Or using Docker Compose:

services:
  filesystem-mcp:
    build: .
    stdin_open: true
    volumes:
      - ./:/projects/workspace:ro
    command: ['/projects/workspace']

CLI Usage

filesystem-mcp [options] [allowedDirs...]

Arguments:
  allowedDirs              Directories the server can access

Options:
  --allow-cwd              Allow the current working directory as an additional root
  --port <number>          Enable HTTP transport on the given port
  -v, --version            Display server version
  -h, --help               Display help

Examples:
  $ npx @j0hanz/filesystem-mcp@latest /path/to/project
  $ npx @j0hanz/filesystem-mcp@latest --allow-cwd
  $ npx @j0hanz/filesystem-mcp@latest --port 3000 /path/to/project

Client Configuration

<details> <summary><b>Install in VS Code</b></summary>


Add to .vscode/mcp.json:

{
  "servers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

Or install via CLI:

code --add-mcp '{"name":"filesystem","command":"npx","args":["-y","@j0hanz/filesystem-mcp@latest"]}'

</details>

<details> <summary><b>Install in VS Code Insiders</b></summary>


Add to .vscode/mcp.json:

{
  "servers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

Or install via CLI:

code-insiders --add-mcp '{"name":"filesystem","command":"npx","args":["-y","@j0hanz/filesystem-mcp@latest"]}'

</details>

<details> <summary><b>Install in Cursor</b></summary>


Add to ~/.cursor/mcp.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Visual Studio</b></summary>


Add to <SOLUTIONDIR>.mcp.json or %USERPROFILE%\.mcp.json:

{
  "servers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Goose</b></summary>

Add to ~/.config/goose/config.yaml:

extensions:
  filesystem:
    name: Filesystem MCP
    cmd: npx
    args:
      - -y
      - '@j0hanz/filesystem-mcp@latest'
    enabled: true
    type: stdio

</details>

<details> <summary><b>Add to LM Studio</b></summary>


{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Claude Desktop</b></summary>

Add to claude_desktop_config.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Claude Code</b></summary>

claude mcp add filesystem-mcp -- npx -y @j0hanz/filesystem-mcp@latest

Or add a project-scoped .mcp.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Windsurf</b></summary>

Add to ~/.codeium/windsurf/mcp_config.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Amp</b></summary>

amp mcp add filesystem-mcp -- npx -y @j0hanz/filesystem-mcp@latest

Or add to settings.json:

{
  "amp.mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Cline</b></summary>

Add to cline_mcp_settings.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Codex</b></summary>

codex mcp add filesystem -- npx -y @j0hanz/filesystem-mcp@latest

Or add to ~/.codex/config.toml (or .codex/config.toml in a trusted project):

[mcp_servers.filesystem]
command = "npx"
args = ["-y", "@j0hanz/filesystem-mcp@latest"]

</details>

<details> <summary><b>Install in GitHub Copilot Coding Agent</b></summary>

Add this JSON in your repository's GitHub Copilot coding agent MCP configuration:

{
  "mcpServers": {
    "filesystem": {
      "type": "local",
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"],
      "tools": ["*"]
    }
  }
}

</details>

<details> <summary><b>Install in Warp</b></summary>

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Kiro</b></summary>

Add to .kiro/settings/mcp.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Gemini CLI</b></summary>

Add to ~/.gemini/settings.json:

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Zed</b></summary>

Add to ~/.config/zed/settings.json:

{
  "context_servers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"],
      "env": {}
    }
  }
}

</details>

<details> <summary><b>Install in Augment</b></summary>

Add to VS Code settings.json under augment.advanced:

{
  "augment.advanced": {
    "mcpServers": [
      {
        "id": "filesystem",
        "command": "npx",
        "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
      }
    ]
  }
}

</details>

<details> <summary><b>Install in Roo Code</b></summary>

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

<details> <summary><b>Install in Kilo Code</b></summary>

{
  "mcpServers": {
    "filesystem": {
      "command": "npx",
      "args": ["-y", "@j0hanz/filesystem-mcp@latest"]
    }
  }
}

</details>

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Use Cases

Explore and Understand a Codebase

Discover project structure and navigate unfamiliar repositories. Start with roots to see allowed directories, use tree for an overview, find to locate files by pattern, and read or read_many to inspect contents.

Relevant tools: roots, ls, find, tree, read, read_many, stat

Search Across Files

Locate specific code patterns, function definitions, or configuration values across a project. Use grep for content search with regex support and find for file name matching.

Relevant tools: grep, find

Edit and Refactor Code

Make precise, targeted edits to source files. Use edit for surgical replacements with dry-run preview, or search_and_replace for bulk changes across multiple files matching a glob pattern.

Relevant tools: edit, search_and_replace, write

Diff and Patch Workflow

Compare file versions and apply patches. Generate a unified diff with diff_files, preview with apply_patch(dryRun: true), then apply. Supports both single-file and multi-file patches (best-effort per file with per-file results[]).

Relevant tools: diff_files, apply_patch

File Management

Create directories, move/rename files, delete files, and verify file integrity via SHA-256 hashing.

Relevant tools: mkdir, mv, rm, calculate_hash, write

Architecture

[MCP Client]
    |
    | Transport: stdio (default) or Node Streamable HTTP (--port)
    v
[MCP Server: filesystem-mcp]
    | Entry: src/index.ts -> src/server/bootstrap.ts
    |
    +-- initialize / initialized
    |
    +-- tools/call ──────────────────────────────────────────
    |   +-- [roots]             — List allowed workspace roots
    |   +-- [ls]                — List directory contents
    |   +-- [find]              — Find files by glob
    |   +-- [tree]              — Render directory tree
    |   +-- [read]              — Read file contents
    |   +-- [read_many]         — Read multiple files
    |   +-- [stat]              — Get file metadata
    |   +-- [stat_many]         — Get multiple file metadata
    |   +-- [grep]              — Search file contents
    |   +-- [mkdir]             — Create directory
    |   +-- [write]             — Write file
    |   +-- [edit]              — Edit file (string replacements)
    |   +-- [mv]                — Move/rename file
    |   +-- [rm]                — Delete file
    |   +-- [calculate_hash]    — SHA-256 hash
    |   +-- [diff_files]        — Unified diff
    |   +-- [apply_patch]       — Apply unified patch
    |   +-- [search_and_replace]— Bulk search & replace
    |
    +-- resources/read ──────────────────────────────────────
    |   +-- internal://instructions
    |   +-- internal://tool-catalog
    |   +-- internal://workflows
    |   +-- internal://tool-info/{name}
    |   +-- filesystem-mcp://result/{id}
    |   +-- filesystem-mcp://metrics
    |
    +-- prompts/get ─────────────────────────────────────────
    |   +-- get-help (optional topic argument)
    |   +-- compare-files (original, modified)
    |   +-- analyze-path (path)
    |   +-- get-tool-help (name)
    |
    +-- Capabilities: logging, resources, tools, prompts, completions, tasks

Request Lifecycle

[Client] -- initialize {protocolVersion, capabilities} --> [Server]
[Server] -- {protocolVersion, capabilities, serverInfo} --> [Client]
[Client] -- notifications/initialized --> [Server]
[Client] -- tools/call {name, arguments} --> [Server]
[Server] -- validate(inputSchema) --> [Handler]
[Handler] -- {content: [{type, text}], structuredContent?, isError?} --> [Client]

MCP Surface

Tools

roots · ls · find · tree · read · read_many · stat · stat_many · grep · mkdir · write · edit · mv · rm · calculate_hash · diff_files · apply_patch · search_and_replace

roots

List allowed workspace roots. Call first — all other tools are scoped to these directories.

_No parameters._

---

ls

List immediate directory contents: name, path, type, size, modified date.

| Parameter | Type | Required | Description | | ----------------------- | ------- | -------- | --------------------------------------------------------------------------- | | path | string | no | Base directory (default: root) | | includeHidden | boolean | no | Include dotfiles. Default: false | | includeIgnored | boolean | no | Include ignored items (node_modules, .git). Default: false | | maxDepth | integer | no | Max recursion depth (1-50) when pattern is provided | | maxEntries | integer | no | Max entries before truncation. Default: 20000, Max: 20000 | | sortBy | enum | no | name \| size \| modified \| type. Default: name | | pattern | string | no | Relative glob filter (e.g. */.ts). Absolute paths and .. are rejected | | includeSymlinkTargets | boolean | no | Resolve symlink targets. Default: false | | cursor | string | no | Pagination cursor from a previous response |

---

find

Find files by glob pattern. Returns matching files with metadata.

| Parameter | Type | Required | Description | | ---------------- | ------- | -------- | ---------------------------------------------------------------------------- | | path | string | no | Base directory (default: root) | | pattern | string | yes | Relative glob pattern (e.g. */.ts). Absolute paths and .. are rejected | | maxResults | integer | no | Max results (1-10000). Default: 100 | | includeIgnored | boolean | no | Include ignored items. Default: false | | includeHidden | boolean | no | Include dotfiles. Default: false | | sortBy | enum | no | path \| name \| size \| modified. Default: path | | maxDepth | integer | no | Max directory depth (0-100) | | cursor | string | no | Pagination cursor |

---

tree

Render a directory tree with bounded recursion. Returns ASCII tree + structured JSON.

| Parameter | Type | Required | Description | | ---------------- | ------- | -------- | ---------------------------------------------------- | | path | string | no | Base directory (default: root) | | maxDepth | integer | no | Depth (0 = root node only). Default: 5, Max: 50 | | maxEntries | integer | no | Max entries. Default: 1000, Max: 20000 | | includeHidden | boolean | no | Include dotfiles. Default: false | | includeIgnored | boolean | no | Include ignored items. Default: false | | includeSizes | boolean | no | Include file sizes in tree entries. Default: false |

---

read

Read text file contents. Use head/tail to preview first/last N lines of large files.

| Parameter | Type | Required | Description | | ------------- | ------- | -------- | ----------------------------------------------------------- | | path | string | yes | Absolute path to file | | head | integer | no | Read first N lines (1-100000) | | tail | integer | no | Read last N lines (1-100000) | | startLine | integer | no | Start line (1-based, inclusive) | | endLine | integer | no | End line (1-based, inclusive). Requires startLine | | includeHash | boolean | no | Include SHA-256 hash of full file content. Default: false |

---

read_many

Read multiple text files in one request.

| Parameter | Type | Required | Description | | ----------- | -------- | -------- | ------------------------------- | | paths | string[] | yes | Files to read (1-100 paths) | | head | integer | no | Read first N lines of each file | | tail | integer | no | Read last N lines of each file | | startLine | integer | no | Start line (1-based) per file | | endLine | integer | no | End line (1-based) per file |

---

stat

Get file/directory metadata: size, modified, permissions, mime, tokenEstimate.

| Parameter | Type | Required | Description | | --------- | ------ | -------- | ---------------------------------- | | path | string | yes | Absolute path to file or directory |

---

stat_many

Get metadata for multiple files/directories in one request.

| Parameter | Type | Required | Description | | --------- | -------- | -------- | ---------------------------- | | paths | string[] | yes | File/directory paths (1-100) |

---

grep

Search file contents (grep-like). Returns matching lines with optional context.

| Parameter | Type | Required | Description | | ---------------- | ------- | -------- | ------------------------------------------------------------------- | | path | string | no | Base directory (default: root) | | pattern | string | yes | Search text or RE2 regex when isRegex=true | | isRegex | boolean | no | Treat pattern as RE2 regex. Default: false | | caseSensitive | boolean | no | Case-sensitive matching. Default: false | | wholeWord | boolean | no | Match whole words only. Default: false | | contextLines | integer | no | Lines of context before/after (0-50). Default: 0 | | maxResults | integer | no | Max match rows (0-10000). Default: 500 | | filePattern | string | no | Relative glob for candidate files (e.g. */.ts). Default: */ | | includeHidden | boolean | no | Include dotfiles. Default: false | | includeIgnored | boolean | no | Include ignored items. Default: false |

---

mkdir

Create a new directory (recursive). Idempotent.

| Parameter | Type | Required | Description | | --------- | -------- | -------- | ----------------------------------------------------------------- | | path | string | no | Absolute path to directory to create | | paths | string[] | no | Multiple directories to create. Either path or paths required |

---

write

Write content to a file, overwriting all existing content. Creates parent directories if needed.

| Parameter | Type | Required | Description | | --------- | ------ | -------- | --------------------- | | path | string | yes | Absolute path to file | | content | string | yes | Content to write |

---

edit

Apply sequential literal string replacements (first occurrence per edit). Use dryRun to preview.

| Parameter | Type | Required | Description | | ------------------ | ------- | -------- | ---------------------------------------------------------- | | path | string | yes | Absolute path to file | | edits | array | yes | List of non-empty {oldText, newText} replacements | | dryRun | boolean | no | Preview edits without writing. Default: false | | ignoreWhitespace | boolean | no | Treat whitespace sequences as equivalent. Default: false |

---

mv

Move or rename a file or directory.

| Parameter | Type | Required | Description | | ------------- | -------- | -------- | ---------------------------------------------------- | | source | string | no | Single path to move (deprecated: use sources) | | sources | string[] | no | Paths to move. Either source or sources required | | destination | string | yes | Destination path |

---

rm

Permanently delete a file or directory. Irreversible.

| Parameter | Type | Required | Description | | ------------------- | ------- | -------- | ---------------------------------------------- | | path | string | yes | Absolute path to file or directory | | recursive | boolean | no | Delete non-empty directories. Default: false | | ignoreIfNotExists | boolean | no | No error if missing. Default: false |

---

calculate_hash

Calculate SHA-256 hash of a file or directory.

| Parameter | Type | Required | Description | | --------- | ------ | -------- | ---------------------------------- | | path | string | yes | Absolute path to file or directory |

---

diff_files

Generate a unified diff between two files. Output feeds directly into apply_patch.

| Parameter | Type | Required | Description | | ------------------ | ------- | -------- | ---------------------------------------------------- | | original | string | yes | Path to original file | | modified | string | yes | Path to modified file | | context | integer | no | Lines of context in diff output | | ignoreWhitespace | boolean | no | Ignore leading/trailing whitespace. Default: false | | stripTrailingCr | boolean | no | Strip trailing carriage returns. Default: false |

---

apply_patch

Apply a unified diff patch to one or more files. Single-file: throws on failure. Multi-file: best-effort per file with results[]. Workflow: diff_files -> apply_patch(dryRun) -> apply_patch.

| Parameter | Type | Required | Description | | ------------------------ | ------- | -------- | ---------------------------------------------------------- | | path | string | yes | Path to file (single) or base directory (multi-file patch) | | patch | string | yes | Unified diff with @@ hunk headers (single or multi-file) | | fuzzFactor | integer | no | Max fuzzy mismatches per hunk (0-20) | | autoConvertLineEndings | boolean | no | Auto-convert line endings. Default: true | | dryRun | boolean | no | Validate without writing. Default: false |

---

search_and_replace

Bulk search-and-replace across files matching a glob. Replaces all occurrences per file. Always dryRun: true first.

| Parameter | Type | Required | Description | | ---------------- | ------- | -------- | ------------------------------------------------------- | | path | string | no | Base directory (default: root) | | filePattern | string | no | Relative glob pattern (e.g. */.ts). Default: */ | | searchPattern | string | yes | Text to search. RE2 regex when isRegex=true | | replacement | string | yes | Replacement text. Supports $1, $2 with regex | | isRegex | boolean | no | Treat as RE2 regex. Default: false | | dryRun | boolean | no | Preview matches with diff. Default: false | | includeHidden | boolean | no | Include dotfiles. Default: false | | includeIgnored | boolean | no | Include ignored items. Default: false | | returnDiff | boolean | no | Return diff even when not dry-run. Default: false | | maxFiles | integer | no | Max files to process before stopping (1-10000) | | caseSensitive | boolean | no | Case-sensitive matching. Default: true |

Resources

| Resource | URI | MIME Type | Description | | ------------ | ------------------------------ | ---------------- | ------------------------------------------------------------------ | | Instructions | internal://instructions | text/markdown | Comprehensive usage rules and guidelines | | Tool Catalog | internal://tool-catalog | text/markdown | Tool selection guide and data flow map | | Workflows | internal://workflows | text/markdown | Standard operating procedures for exploration, search, edit, patch | | Tool Info | internal://tool-info/{name} | text/markdown | Per-tool contract details, nuances, gotchas | | Result Cache | filesystem-mcp://result/{id} | text/plain | Ephemeral cached tool output (large results externalized here) | | Metrics | filesystem-mcp://metrics | application/json | Live per-tool call/error/avgDurationMs snapshot |

Prompts

| Prompt | Arguments | Description | | --------------- | ---------------------- | ---------------------------------------------------------------------- | | get-help | topic (optional) | Return usage instructions. Optionally filter by section heading prefix | | compare-files | original, modified | Generate a workflow for comparing two files using diff_files | | analyze-path | path | Generate a workflow for analyzing a file or directory | | get-tool-help | name | Return a prompt with the authoritative contract for a specific tool |

MCP Capabilities

| Capability | Status | Evidence | | ------------- | --------- | -------------------------------------------------------------------------- | | logging | confirmed | src/server/bootstrap.ts — registered in capabilities | | resources | confirmed | src/server/bootstrap.ts — 6 resources registered | | tools | confirmed | src/server/bootstrap.ts — 18 tools registered | | prompts | confirmed | src/server/bootstrap.ts — 4 prompts registered | | completions | confirmed | src/completions.ts — path, topic, and tool-name auto-completion | | tasks | confirmed | src/server/bootstrap.ts — optional task support (list, cancel, requests) |

Tool Annotations

| Annotation | Tools | Value | | ----------------------- | --------------------------------------------------------------------------------------------------------------- | -------------------------------------- | | readOnlyHint: true | roots, ls, find, tree, read, read_many, stat, stat_many, grep, calculate_hash, diff_files | Read-only, idempotent, non-destructive | | destructiveHint: true | write, edit, rm, mv, search_and_replace, apply_patch | Destructive writes, not idempotent | | idempotentHint: true | mkdir | Idempotent write, non-destructive |

Structured Output

All 18 tools define outputSchema (Zod -> JSON Schema) and return structuredContent alongside text content. Set FS_CONTEXT_STRIP_STRUCTURED=true to strip output schemas from tool definitions (reduces token usage for LLMs that don't use structured output).

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Configuration

HTTP & Auth

| Variable | Default | Description | | ---------------------------------- | ---------------- | -------------------------------------------------------------- | | FILESYSTEM_MCP_API_KEY | _(none)_ | Bearer token required when binding HTTP to a non-loopback host | | FILESYSTEM_MCP_MAX_HTTP_SESSIONS | 100 | Max concurrent HTTP sessions (1-10,000) | | FILESYSTEM_MCP_HTTP_HOST | 127.0.0.1 | HTTP server bind address | | FS_CONTEXT_MAX_REQUEST_BYTES | 4194304 (4 MB) | Max HTTP request body size (1 KB - 256 MB) |

File Size Limits

| Variable | Default | Description | | -------------------------- | ------------------ | ------------------------------------------------------------- | | MAX_FILE_SIZE | 10485760 (10 MB) | Max file size for text read operations (1 MB - 100 MB) | | MAX_SEARCH_SIZE | 1048576 (1 MB) | Max file size for content search/grep (100 KB - 10 MB) | | MAX_READ_MANY_TOTAL_SIZE | 524288 (512 KB) | Max cumulative size for read_many requests (10 KB - 100 MB) | | DEFAULT_SEARCH_TIMEOUT | 5000 | Search operation timeout in ms (100 - 60,000) |

Access Control

| Variable | Default | Description | | ---------------------------- | -------- | ------------------------------------------------------------------------------- | | FS_CONTEXT_ALLOW_SENSITIVE | false | Allow reading sensitive files (.env, .key, credentials, tokens) | | FS_CONTEXT_DENYLIST | _(none)_ | CSV/newline-separated glob patterns to block (in addition to built-in denylist) | | FS_CONTEXT_ALLOWLIST | _(none)_ | CSV/newline-separated glob patterns to permit (overrides denylist) |

Output & Inline Limits

| Variable | Default | Description | | ------------------------------- | ------- | ------------------------------------------------------------------------------ | | FS_CONTEXT_MAX_INLINE_CHARS | 20000 | Max inline result chars before externalizing to filesystem-mcp://result/{id} | | FS_CONTEXT_MAX_INLINE_MATCHES | 50 | Max inline search matches before truncation | | FS_CONTEXT_STRIP_STRUCTURED | false | Strip outputSchema from tool definitions (reduces tokens) |

Tasks

| Variable | Default | Description | | ------------------------------------- | ---------------- | ----------------------------------------------- | | FILESYSTEM_MCP_MAX_TASK_TTL_MS | 3600000 (1 hr) | Max task TTL before auto-eviction (1 s - 24 hr) | | FILESYSTEM_MCP_MAX_CONCURRENT_TASKS | 100 | Max simultaneous task executions (1-10,000) |

Logging & Diagnostics

| Variable | Default | Description | | --------------------------------- | ------- | ------------------------------------------------------------------------------ | | FILESYSTEM_MCP_LOG_LEVEL | info | MCP log level: debug, info, notice, warning, error, critical, alert, emergency | | FS_CONTEXT_DIAGNOSTICS | false | Enable diagnostic logging | | FS_CONTEXT_DIAGNOSTICS_DETAIL | false | Enable detailed diagnostic output | | FS_CONTEXT_TOOL_LOG_ERRORS | false | Log tool errors to stderr | | FS_CONTEXT_SEARCH_WORKERS_DEBUG | false | Debug logging for search worker pool |

Performance

| Variable | Default | Description | | ------------------------------- | ---------------- | ---------------------------------------- | | FS_CONTEXT_SEARCH_WORKERS | CPU cores (≤ 8) | Concurrent search worker threads (1-16) | | FS_CONTEXT_LIST_CURSOR_TTL_MS | 300000 (5 min) | Cursor TTL for ls pagination snapshots |

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HTTP Endpoints

When started with --port <number>, the server exposes a single MCP endpoint:

| Method | Path | Purpose | | -------- | ------ | ----------------------------------------------------- | | POST | /mcp | Initialize session or send requests (Streamable HTTP) | | GET | /mcp | HTTP streaming session endpoint | | DELETE | /mcp | Terminate a session |

Required headers:

• mcp-protocol-version — use the negotiated MCP protocol version on post-initialize HTTP requests
• mcp-session-id — required for GET/DELETE (returned by POST on initialize)

Authentication: Requests to non-loopback HTTP binds require FILESYSTEM_MCP_API_KEY; clients must then send Authorization: Bearer <key>. Loopback-only binds may omit auth for local use. Uses SHA-256 timing-safe comparison.

CORS: Only localhost origins allowed (127.0.0.1, ::1, localhost).

Host validation: Loopback HTTP binds validate the Host header (localhost, 127.0.0.1, [::1]) to reduce DNS rebinding risk. Non-loopback binds still require FILESYSTEM_MCP_API_KEY.

Security

| Control | Status | Evidence | | ------------------------- | --------- | -------------------------------------------------------------------------------------- | | Path sandboxing | confirmed | src/lib/paths.ts — all paths validated against allowed roots | | Traversal prevention | confirmed | src/lib/paths.ts — resolved paths checked after normalization | | Symlink escape prevention | confirmed | src/__tests__/security.test.ts — symlink boundary enforcement | | Sensitive file denylist | confirmed | src/lib/constants.ts — blocks .git, .env*, SSH keys, certs, secrets | | Origin validation | confirmed | src/server/bootstrap.ts — localhost-only Origin allowlist | | Bearer auth | confirmed | src/server/bootstrap.ts — optional FILESYSTEM_MCP_API_KEY with timing-safe compare | | Input validation | confirmed | src/schemas.ts — Zod strict schemas on all tool inputs | | Request body limit | confirmed | src/server/bootstrap.ts — configurable max request size (413 on overflow) | | Remote bind guard | confirmed | src/server/bootstrap.ts — refuses non-loopback bind without FILESYSTEM_MCP_API_KEY |

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Development

• dev — tsc --watch --preserveWatchOutput — Watch mode TypeScript compilation
• dev:run — node --env-file=.env --watch dist/index.js — Run server with auto-reload
• start — node dist/index.js — Run production server
• build — node scripts/tasks.mjs build — Clean build
• test — node scripts/tasks.mjs test — Build + run all tests
• test:fast — node --test --import tsx/esm src/__tests__/*/.test.ts node-tests/*/.test.ts — Run tests without build
• lint — eslint . — Lint source
• type-check — node scripts/tasks.mjs type-check — Type-check src + tests
• format — prettier --write . — Format code
• inspector — npm run build && npx -y @modelcontextprotocol/inspector node dist/index.js ${workspaceFolder} — Launch MCP Inspector

Build and Release

• CI: .github/workflows/release.yml — runs lint, type-check, test, build before tagging/publishing.
• Docker: Multi-stage build with node:24-alpine. Builder compiles TypeScript + native modules (re2); release stage runs as non-root mcp user.
• npm: npm run prepublishOnly runs lint + type-check + build.

Troubleshooting

• "No allowed directories" — Pass at least one directory argument or use --allow-cwd.
• Sensitive file blocked — Files matching the denylist (.env*, .git, SSH keys) are blocked by design. Check src/lib/constants.ts for the full list.
• Large result externalized — When tool output exceeds inline limits, it's cached as a resource at filesystem-mcp://result/{id}. Read the resource URI to get the full content.
• Stdio: logs on stdout — Keep logs on stderr only. The server uses console.error for diagnostics.
• HTTP 413 — Request body exceeds FS_CONTEXT_MAX_REQUEST_BYTES. Increase the limit or reduce payload size.
• HTTP 401 — FILESYSTEM_MCP_API_KEY is set but the request is missing or has an incorrect Authorization: Bearer header.

Credits

| Dependency | Description | | ------------------------------------------------------------------------------------------ | --------------------------------------------- | | @modelcontextprotocol/server | MCP server SDK package | | @modelcontextprotocol/client | MCP client SDK package | | @modelcontextprotocol/node | Node transport package for MCP runtime | | commander | CLI argument parsing | | diff | Unified diff generation and patch application | | ignore | .gitignore pattern matching | | re2 | Safe RE2 regex engine (no ReDoS) | | zod | Schema validation and JSON Schema generation |

License

MIT License. See LICENSE for details.

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